Programmer notes

The iLab Neuromorphic Vision C++ Toolkit - Copyright (C) 2001-2005 by the University of Southern California (USC) and iLab at USC.

Major portions of the iLab Neuromorphic Vision C++ Toolkit are protected under the U.S. patent ``Computation of Intrinsic Perceptual Saliency in Visual Environments, and Applications'' by Christof Koch and Laurent Itti, California Institute of Technology, 2001 (patent pending; application number 09/912,225 filed July 23, 2001; see http://pair.uspto.gov/cgi-bin/final/home.pl for current status)

This file is part of the iLab Neuromorphic Vision C++ Toolkit.

The iLab Neuromorphic Vision C++ Toolkit is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.

The iLab Neuromorphic Vision C++ Toolkit is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with the iLab Neuromorphic Vision C++ Toolkit; if not, write to the Free Software Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA.

Table of contents:

• Introduction
• 2. GETTING THE CODE
• 3. FILE ORGANIZATION
• 4. COMPILING
• 5. EXECUTABLES
• 6. PROCESSING VIDEO CLIPS
• 7. RUNNING PARALLEL CODE
• 8. DOCUMENTATION
• 9. WRITING CODE
• 10. ROADMAP

Introduction

1.1. Purpose and Objectives

This toolkit provides a number of C++ classes to assist you in developing neuromorphic vision algorithms. Neuromorphic algorithms are motivated by and closely follow the architecture of biological brains.

Originally, this toolkit was developed to implement our model of bottom-up, saliency-based visual attention, as described in the following scientific articles (all available in PDF format from http://iLab.usc.edu):

L. Itti, C. Koch, E. Niebur, A Model of Saliency-Based Visual Attention for Rapid Scene Analysis, IEEE Transactions on Pattern Analysis and Machine Intelligence, Vol. 20, No. 11, pp. 1254-1259, Nov 1998.

L. Itti, Models of Bottom-Up and Top-Down Visual Attention, California Institute of Technology, Jan 2000. [Ph.D. Thesis]

L. Itti, C. Koch, A saliency-based search mechanism for overt and covert shifts of visual attention, Vision Research, Vol. 40, No. 10-12, pp. 1489-1506, May 2000.

L. Itti, C. Koch, Computational Modeling of Visual Attention, Nature Reviews Neuroscience, Vol. 2, No. 3, pp. 194-203, Mar 2001.

and many others (see web site, under 'publications').

The model takes an input color image or video sequence and predicts which locations in this image will attract our visual attention (that is, are conspicuous, or 'salient'). It replicates processing in posterior parietal cortex and other brain areas along the dorsal visual stream in the primate brain. The model includes a bottom-up (image-based) computation of low-level color, intensity, orientation and motion features, as well as a non-linear spatial competition which enhances salient locations in each of these feature channels. All feature channels feed into a unique scalar ``saliency map'' which controls where to next focus attention onto. Because it includes a detailed low-level vision front-end, the model has been applied not only to laboratory stimuli, but also to a wide variety of natural scenes. In addition to predicting a wealth of psychophysical experiments, the model demonstrates remarkable performance at detecting salient objects in outdoors imagery --- sometimes exceeding human performance --- despite wide variations in imaging conditions, targets to be detected, and environments.

1.2. Classes included in the package

• low-level graphic elements such as a 2D point (Point2D), an RGB pixel (PixRGB), a rectangle, etc

• a template Image class that defines a 2D array (of data type chosen through the C++ template mechanism) and provides numerous low-level image processing functions, such as convolution, rescaling, basic arithmetic operations, decimation & interpolation, various normalizations, type conversions, omnidirectional lens distortion correction, various methods to draw lines, circles, rectangles, points, etc and miscellaneous functions such as speckle noise addition, 3D warping, flooding, edge detection, 3/4 chamfer distance transform, etc

• a template ImageSet class which implements collections of Image objects, possibly forming dyadic pyramids of various data types (defined as template argument) and for various pyramid schemes. A dyadic pyramid is a series of images (one image per pyramid 'level,' where the base of the pyramid, or level 0, is the original image from which the pyramid is built), such that the next level in the pyramid is derived from the current level by applying some filter and then reducing the size of the level by a factor two horizontally and vertically (hence the term 'dyadic,' which means in powers of two). Pyramid schemes include Gaussian pyramids with several Gaussian filter sizes (thus, a Gaussian (= blurring) filter is applied to each level before size reduction), Laplacian (= edge detector), Gabor (= detect oriented edges in a given direction), etc

• a Raster namespace and set of functions which allow storage and retrieval of Image objects as PNM (Portable aNyMap; also known as PPM Portable PixMap and PPM Portable GreyMap) image files on disk, a very easy to use, uncompressed and standardized image file format. PNM is a very convenient format because of the availability of the 'netpbm' suite (installed by default in many Linux distributions), which includes many programs to convert from any other image format to PPM/PGM, and then from PPM/PGM to any other format. We also support other common image formats such as JPEG and PNG (not to be confused with PNM), as well as raw YUV image formats (see RasterFileFormat and VideoFormat).

• several classes which are specific to our model of bottom-up, saliency-based visual attention, such as a number of Channel classes (which wrap underlying image pyramids of various types), a VisualCortex class (contains several pyramids for color, intensity, orientation and flicker information), a SaliencyMap class (which is a 2D array of simple leaky integrate & fire neurons), a WinnerTakeAll class (which is a distributed neuronal algorithm by which the location of maximum activity can be detected in the saliency map), a Brain class (contains a retina, visual cortex, saliency map, winner-take-all and a few other objects), a number of SaccadeController classes which allow for the control of eye movements from shifts of attention, a ShapeEstimator class which computes an estimate bounding region around an attended object, etc

• several classes that are specific to our model of contour integration in the primate brain. These classes simulate intricate patterns of connections between neurons visually responsive to various locations in our visual environment, and allow the model to extract salient contours from surrounding noise and clutter (contourNeuron and contourRun classes).

• several classes specific to symbolic knowledge representation, which we use to model the influence of a verbally-specified task/goal onto the spatiotemporal deployment of attention and eye movements.

• several classes that deal with object recognition, including a re-implementation of the HMAX model, a 2-layer backpropagation network for object recognition, etc.

• a Jet class, which is a vector of responses from various neurons all responding to a same location in the visual field, but with different sensitivities (e.g., one neuron is tuned to red color, another to vertical orientation, etc). Several operations are provided that allow the computation of mean jets, distance between two jets, etc. This class has been applied to some fairly unsuccessful (so far) attempt at segmenting objects from scenes using some jet-based metric.

• a V4Lgrabber class, which allows very easy capture of video frames from any Video4Linux-compliant framegrabber device installed in your computer (see http://roadrunner.swansea.uk.linux.org/v4l.shtml).

• an IEEE1394grabber class, which allows very easy capture of video frames from any IEEE-1394 (FireWire) digital camera (i.e., web-cam, as opposed to DV camcorders, which use a different data stream format).

• various other hardware drivers, such as a Serial port class, a Serial-Servo-Controller (SSC) class, an alphanumeric LCD display driver, various pan/tilt camera head drivers with associated calibration code, a Keyboard driver, AudioGrabber and AudioMixer abstractions, etc.

• an XWindow class which just opens a window on the screen and can display Images in it, and is extremely easy to use; and an XWinManaged class which in addition responds to various mouse and widget events.

• A ParamMap class for storage/retrieval of various parameters in config files; and a somewhat overlapping readConfig class which allows easy reading/parsing/storage of configuration files for your applications.

• a set of very fast and multithreaded interprocess communication classes which allow quick transfer of images and other data from one computer to another over the network; most of these classes (TCPxxxx.C/.H) will not be of interest to the user, who will mostly deal with the Beowulf class (sets up interconnections between different computers on a network) and the TCPmessage class (builds messages to be passed between machines and can contain various elements such as images, text strings, etc).

• a very convenient logging facility which provides a set of functions to be used instead of printf to report debugging messages, information messages, errors or fatal errors. In addition to accepting the same syntax as printf, these functions will print the program name, class name, method name, possible system messages (see 'man perror'), etc. either to standard output or through the systemwide system logs (see 'man syslog').

• several other classes, such as a Timer class which can be used to measure time, a Range class, etc.

1.3. Basic features of the programming environment

The toolkit makes use of a number of advanced C++ programming techniques, which are intended to make use of its various components easier and more flexible to the knowledgeable programmer. While this brings many advantages described below, one drawback is that some of the constructs and techniques employed may be unfamiliar to the inexperienced programmer. If you are only moderately familiar with C++, we urge you to very carefully read the book "The C++ Programming Language" (Third Edition or Special Edition), by Bjarne Stroustrup Addison-Wesley, ISBN 0-201-88954-4 or 0-201-70073-5. See http://www.research.att.com/~bs/3rd.html for details.

• Full configure process so that the source tree should compile on a variety of computing environments (see configure.in, configure and Makefile.in);

• Full test suite to ensure that various pieces of the code continue to work the same as you implement new functionality (see TestSuite.H and "make test");

• Heavy use of C++ template mechanisms, so that many classes are implemented in a type-generic manner, and may be instantiated for various data types (e.g., the Image class is parameterized by a template argument defining the datatype to use for individual pixels; functions operating on the Image class are written in a generic manner, with as few assumptions as possible made on what the pixel datatype may end up being; Image objects may then be created in your programs that may use pixels of type byte, int, float, PixRGB<byte>, IntFireNeuron, Jet<byte>, or an open-ended variety of other datatypes);

• Heavy use of inheritance and class hierarchies. When a model component is being implemented in several forms, either for experimentations with several possible approaches, or for re-use of a generic framework in various specializations, usually we define a base class to specify the interface (sometimes that base class is purely virtual), and then a number of derived classes which implement various behaviors behind that interface. Examples are the Channel hierarchy, where ChannelBase defines the common interface, then derived into SingleChannel (contains one ImageSet) and ComplexChannel (contains a collection of SingleChannel and/or ComplexChannel objects), and further derived into IntensityChannel, RedGreenChannel, DirectionChannel, MotionChannel, etc;

• Reference-counted, copy-on-write memory allocation for large objects such as images (so that various copies of an image share the same physical memory until one of the copies attempts to modify that memory, at which point a copy of the memory is first made; see ArrayData.H and its use in Image.H and TCPmessage.H);

• Automatic type promotion, so that operations among template classes automatically avoid all overflows (e.g., multiplying an image of bytes by a float coefficient results in an image of floats; see Promotions.H);

• Automatic range checking and clamping during demotion of types (e.g., assigning an image of floats to an image of bytes transparently converts and clamps all pixel values to the 0..255 range; see Promotions.H);

• Smart reference-counted pointers, so that when the last pointer to an object is destroyed, memory allocated for the pointee is automatically freed (see SharedPtr.H);

• Persistent model parameters that may be stored/retrieved to/from configuration files, or configured via command-line options. A framework is provided where a run-time selection of various model components may export at run-time command-line options that will allow tuning of some of their internal parameters. The mechanism is pushed to the extreme, so that new model components selected via the command line may export their set of command-line options while the command line is being parsed (see ModelParam.H, ModelComponent.H and ModelManager.H for the general framework, and VisualCortexConfigurator.H for exporting options while the command-line is being parsed);

• Atomic operations (see atomic.H);

• Range-checked iterators that may be used in place of normal iterators, for debugging purposes (see CheckedIterator.H);

• MMX/SSE alternative faster implementations for some of our core image processing functions (e.g., lowPass3, byte-to-int conversions, etc; see mmx-sse.H);

• Wrappers to use some of our classes from within Matlab (see, e.g., mexSaliency.C);

• Use of multi-threading (see, e.g., RadioDecoder.H, TCPcommunicator.H and others);

• A large collection of test programs that demonstrate the minimal use of a given class (see test-*.C);

To get started, please see the online documentation at http://iLab.usc.edu/sdoc/html/ (use the same username/pass as you used to obtain this code). Make sure you read all of the introductory pages (links to them are both on the front page and on the side bar, under "Related pages"). Once you have read those, a good way to get accustomed to the code base is to browse through the class hierarchy and click on the name of any highlighted entity you may not be familiar with. Also, be sure to check the online repository browser, which will allow you to check the full edit history of every source file, at

http://ilab.usc.edu/cgi-bin/secure/viewcvs.cgi/trunk/saliency/

(same username/pass as for the documentation).

Also, a wrapper to "man" is provided and named saliency/bin/mn; once you have saliency/bin in you path, you can use it just like "man" to view documentation about a class or file as a man page; for example:

     mn lcd
     mn FrameGrabber.H

and so on. The actual man pages reside in saliency/doc/man and are created when you type "make doc" from within saliency/src/.

2. GETTING THE CODE

2.1. Subversion (SVN)

The easiest way to obtain the latest revision of the source code is from our Subversion repository. Subversion (abbreviated SVN, homepage http://subversion.tigris.org) is a version control system designed as a new-and-improved replacement for CVS.

Note:

There is an excellent O'Reilly book about Subversion, which is available, for free, in its entirety, here:

http://svnbook.red-bean.com/

(Make sure that you click on links for the latest version of the book -- currently there are 1.0 and 1.1 versions, and (obviously) 1.1 is the more recent version).

If you have a question about subversion that isn't answered in this README, your next source should be the svn book online.

Subversion allows several programmers to simultaneously work on the same code and that will keep track of all changes made; to achieve that, the master copy of the source code is maintained in a central database, and the various programmers download a working copy of the code to their various machines and home directories. After they have modified the code and the modifications work, they post their changes back to the master repository for everyone to enjoy.

You can see the contents of our neuromorphic vision toolkit subversion repository through a web interface at:

http://ilab.usc.edu/cgi-bin/secure/viewcvs.cgi/trunk/saliency/

(Be assured that although the URL contains 'viewcvs', you are indeed looking at a subversion (svn) repository, not a cvs one. The 'viewcvs' web interface works with both CVS and svn repositories).

This will allow you to see the various revisions, who made them and when, and to highlight differences between various versions of the code. You should not use this to download the code; rather follow these instructions:

2.2. Using svn

Go to the directory where you want to install the source code. Then type:

        svn checkout svn://ilab.usc.edu/trunk/saliency

this will download the entire source tree.

You can now start editing the code (see below for the various subdirectories). Once you have made changes and have tested that everything compiles fine and works ok, you can check which files you have modified locally by typing:

        svn status

Note:

CVS USERS SEE NOTE BELOW REGARDING 'svn status' and 'svn update'

Once you are satisfied that your changes are ready for the world to see, you can post them by issuing (from the directory where you have made changes):

        svn commit -m"short message describing what you did"

If someone else has modified the same source code as you have, svn will refuse to commit your changes and ask you to first update your source to the latest subversion repository revision; you do that by typing:

        svn update

Note:

NOTE TO CVS USERS: Unlike in CVS, you should NOT use 'svn update' to quickly check which files you have modified locally. Instead you should use 'svn status', and here's why.

In fact CVS has a 'cvs status' command that would give you information about local changes, but its output is so verbose that nobody ever uses it; everyone uses 'cvs update' instead. Of course there are two problems with that: (1) it might bring in new modifications from the repository, which you don't necessarily want, and (2) it requires significant network bandwidth to communicate with the CVS repository and determine what changes you have made. In svn, the situation is much nicer. For one thing, the output of 'svn status' is now compact, just like the output of 'cvs update' was. For another thing, 'svn status' requires no network traffic -- subversion keeps pristine copies of the unmodified files tucked away inside the various .svn directories in your working copy. Therefore you can do 'svn status' or 'svn diff' to examine local changes without having to wait for the network, and without placing undue load on the svn server.

When you do 'svn update', subversion will try to merge other people's into your own working copy. Usually this is fully automatic, unless you have been editing exactly the same lines in a file as someone else has (you should then talk to that person to figure out why both of you are editing the same code, since usually different people will work on different parts of the code!). In this case, subversion will notify you that there has been a conflict by printing a 'C' next to the offending file's name during your 'svn update'. Subversion's approach to conflicts is more user-friendly than CVS's approach -- in particular, it won't let you commit a file containing those pesky >>>>>>>> conflict markers by accident. With subversion, you must explicitly notify svn after you've resolved the conflict, by using the 'svn resolved' command.

If there has been a conflict, subversion puts three extra files in your working copy:

  filename.mine     [contains just your local modifications]
  filename.r5000    [the base file against which you made local mods]
  filename.r5001    [the latest version on the server]

where '5000' is the revision against which you had made local modifications, and '5001' is the latest revision on the server.

You can do one of three things to fix the conflict:

• merge the changes by hand, by editing <filename> and removing the various conflict markers

• OR, copy one of the three temporary files listed above back on top of <filename>

• OR, throw away your local changes by doint 'svn revert <filename>'

Once you are done fixing the conflict, you must inform svn of this by doing 'svn resolved <filename>'.

Then, you can commit any remaining changes in <filename> to the server with another 'svn commit', BUT... be sure to first run 'svn diff' on the file in question, to make sure you really know which changes you have added.

Subversion will safely ignore all files that have not been explicitly added to the repository; these include your .o files, editor backups, and so on. So it is not necessary to clean up those files before doing a 'svn commit'.

In summary, the recommended strategy for smooth interaction with the source tree is:

• NEVER copy files around (e.g., put them onto another computer), then edit them, meanwhile do something else in your working svn tree and do an update once in a while, then some day copy those old files back into your svn working copy, overwriting the up-to-date ones. This will break the entire mechanism if someone else has also edited that file and committed changes (indeed, subversion will think that you just decided to delete all of this other person's edits!);

• Instead, if you need to have various copies of the code at various places, just checkout a copy at each place and work in those checked-out trees. Once you are done with some edits at one place (e.g., home) just commit them to the server and when you get to another place (e.g., work), just update your tree there. Thus, you are using the central svn server to keep your various copies of the code in sync and transfer your edits from one place to another;

• Once you have made a bunch of changes that work ("make all" and "make test" pass, though it is okay if your new code is bogus in its execution as long as you are the only one using it), do the following:
  • 'svn update' to make sure that you are in sync;
  • 'svn status' to show you with an "M" prefix all the files you have modified. If some files show up there that you did not think you had modified or did not wish to modify, try 'svn diff <file>' to see how your copy differs from the server's master copy. If you realize that these are edits you made while debugging, but you don't want to commit them, simply do an 'svn revert <file>' to restore that file to its pristine unmodified state.
  • If you have made a large number of changes, and a single commit message would not work well, you may wish to commit your modified files individually or in smaller groups; for example:

            svn commit -m"fixed bug with lowPass3()" Image_FilterOps.C
            svn commit -m"new compute() function" myStuff.H myStuff.C
    

However, note that in subversion, unlike CVS, commits are atomic -- everything that happens in a single 'svn commit' command is stored as a single revision in the server, and bumps the global revision number only once. Therefore, it is sub-optimal (though not catastrophic) to use more than one 'svn commit' for a set of changes that really belong together in a single unit.

And so on. You can do an 'svn status' after each step to see which files remain to commit. Using this simple behavior, you will avoid committing changes you did not wish to commit.

2.3. Advanced svn techniques

PLEASE DO NOT USE THE FOLLOWING UNLESS YOU REALLY KNOW WHAT YOU ARE DOING!

To add a new file to the repository, you need to tell svn by doing:

        svn add newfile

this will schedule the file for addition; it will actually be added when you next commit.

To remove a file from the repository, do

        svn delete file

and it will be deleted when you next commit. Deleted files aren't really gone forever; they can still be retrieved by doing an 'svn checkout' with an older date or revision number.

To add a new subdirectory

        svn mkdir newdir
        svn commit -m"created newdir"

To remove a directory: unlike in CVS, this is actually possible in subversion. It's the same as deleting a file:

        svn delete somedir

To rename a file or directory: this is another thing that was not possible in CVS, but is trivial in subversion:

        svn move name1 name2

2.4. About svn properties

Note:

The most important thing about this section -- if you are going to commit code to the subversion repository, you should modify your ~/.subversion/config file so that the svn:keywords property gets set automatically on any files that you add to the repo. See the "svn:keywords" section below.

Subversion allows you to use arbitrarily-named properties to associate any user-specified content with versioned files (can be text, or other MIME types... so e.g. it's possible to put images into an svn property). Changes to properties are versioned just like changes to file contents.

The main subcommands associated with properties are the following:

	svn proplist -v <filename>
	svn propset <property-name> <property-value> <filename>
	svn propget <property-name> <filename>
	svn propedit <property-name> <filename>
	svn propdel <property-name> <filename>

Note:

In order to use 'svn propedit', you need to set at least one of the SVN_EDITOR, VISUAL, or EDITOR environment variables. If you haven't done that, you'll get an error like the following:

          svn: None of the environment variables SVN_EDITOR, VISUAL or
          EDITOR is set, and no 'editor-cmd' run-time configuration
          option was found

To set one of the env vars, just do

          export SVN_EDITOR="emacs -nw"    (in sh or bash)

          or

          setenv SVN_EDITOR "emacs -nw"    (in csh or tcsh)

and if you want to make that change permanent, add the line somewhere in your ~/.bashrc or ~/.cshrc.

For example:

  cd /path/to/saliency
  svn propedit svn:ignore .  (brings up an emacs window for editing the property)
  svn proplist -v .
  -->  Properties on '.':
         svn:ignore : Makefile
       Makefile.local
       TAGS
       autom4te-2.5x.cache
       autom4te.cache
       build
       config.log
       config.status
       depoptions
       inst
       mexopts.sh

(The svn:ignore property is equivalent to the old .cvsignore files.)

  svn proplist -v src/Image/Image.H
  -->  Properties on 'src/Image/Image.H':
         svn:keywords : Author Date Id Revision
         svn:eol-style : native

  svn proplist -v devscripts/extract_templates.tcl
  -->  Properties on 'devscripts/extract_templates.tcl':
         svn:executable : *
         svn:keywords : Author Date Id Revision
         svn:eol-style : native

Properties can have any name; for example you could associate copyright information with a file like this:

  svn propset copyright 'Copyright (2005)...' foofile

But there are also some 'magic' properties that start with the svn: prefix, and these have a special meaning to svn...

• svn:ignore -- just like the .cvsignore files. The most common use for svn:ignore is likely to be when you add a new executable that will get built in the bin/ directory -- since of course we don't want to check binary executables in to the svn repository, svn will show that it doesn't recognize the new executable by indicating it with a '?' when you run "svn status". Suppose the new executable is named bin/myprog. Then, initially we have the following:

      $ svn status
      ?      bin/myprog
  

  You can avoid that noise by adding myprog to the svn:ignore property of the bin directory... e.g.,

      $ svn propedit svn:ignore bin
  
        (brings up an editor window with the list of items in
        svn:ignore, just add 'myprog' to that list; if you get an error
        message, then see the NOTE above about setting one of the
        SVN_IGNORE, VISUAL, or EDITOR environment variables)
  
      $ svn proplist -v bin
      Properties on 'bin':
        svn:ignore : BeobotLauncher
      CINNICanova
      CINNICinteract
      CINNICstats
      CINNICtest
      ...
  
        (lists all properties and their current values for bin)
  

      $ svn status
       M     bin
  
        (now no longer shows a '?' for myprog, but shows a " M" for bin,
        indicating that bin has locally-changed properties)
  

      $ svn commit -m"Added myprog to svn:ignore for bin." bin
  
        (commits the changed property)
  

• svn:keywords -- specifies which RCS keywords get substituted; unlike CVS, this property defaults to being empty, which means that people either have to remember to set svn:keywords explicitly e.g.

      svn propset svn:keywords "Author Date Id Revision HeadURL" foo.C
  

  or can add some lines to $HOME/.subversion/config to make svn:keywords get set automatically anytime you 'svn add' a new file that has a particular filename extension.

  We recommend that developers who plan to contribute code to our subversion repository add lines similar to the following to the end of their ~/.subversion/config file:

      [miscellany]
      enable-auto-props = yes
  
      [auto-props]
      *.[cC]    = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.[hH]    = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.cc      = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.cpp     = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.hh      = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.hpp     = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.html    = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.m       = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.pl      = svn:eol-style=native;svn:executable;svn:keywords=Author Date Id Revision HeadURL
      *.py      = svn:eol-style=native;svn:executable;svn:keywords=Author Date Id Revision HeadURL
      *.sh      = svn:eol-style=native;svn:executable;svn:keywords=Author Date Id Revision HeadURL
      *.tcl     = svn:eol-style=native;svn:executable;svn:keywords=Author Date Id Revision HeadURL
      *.txt     = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.xml     = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      *.xsl     = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
      Makefile* = svn:eol-style=native;svn:keywords=Author Date Id Revision HeadURL
  
      *.gif     = svn:mime-type=image/gif
      *.jpg     = svn:mime-type=image/jpeg
      *.png     = svn:mime-type=image/png
  

• svn:executable -- doesn't matter what the content of this property is, but if it is present, then svn knows to chmod +x the file when checking it out

• svn:special -- for now, the only thing this is used for is for storing symlinks in the svn repo... e.g.,

      ln -s devscripts scripts
      svn add scripts
      svn proplist -v scripts
      -->  Properties on 'scripts':
             svn:special : *
      svn revert scripts
      rm scripts
  

3. FILE ORGANIZATION

The full tree contains the following (you may not get all of this):

README        this file

src/          source code (historical note [2005-06-12]: the current src/
              directory was renamed from src3/, which itself was a
              descendent of earlier src2/ and src/ directories, all of
              which are available from earlier revisions of the
              subversion repository)

src/Util/
src/Image/
src/Raster/
src/Component/
src/agentMinder/
src/qt/
              as of 2005-06, we are currently undergoing a transition
              to split the source code into subdirectories consisting
              of logically related modules

notes/        various (mostly obsolete) documentation and research notes;
              don't worry too much about it, everything you need is in
              the present README;

devscripts/   shell scripts and other resources used in the course of
              maintaining the source code repository, see
              devscripts/README for more details

doc/          if you do 'make doc', then the resulting output will go
              in doc/html, doc/latex, doc/man, doc/rtf

bin/          executables; this is where the results of your compilation will
              be; everything that remains there after a 'make clean'
              is a shell or perl script that was written to do various
              batch processing;

params/       learning parameters for specialization of the system to one
              given visual search task (e.g., detecting traffic
              signs);

tests/        a test suite consisting of blackbox and whitebox tests
              to verify the behavior of different components of our
              toolkit; to run, do 'cd tests; ./run_test_suite.tcl'
              (takes ~30 seconds on a 2.8GHz Xeon), or do 'cd tests;
              ./run_testlong_suite.tcl' (takes ~300 seconds)

matlab/       some Matlab code for the new version of the oriented filters
              (under development; to be used in conjunction with
              Roberto Manduchi's steerable-scalable filter
              optimization code).

4. COMPILING

4.1. Basic compilation

Use the following steps to build the executables from source:

  cd saliency         ### switch to the source code's directory

  ./configure --help  ### to see a list of possible configuration options

  ./configure         ### run the configure script with optional options
                      ### e.g. ./configure --prefix=/usr/local
                      ###  or  ./configure --enable-mmx --enable-sse
                      ###  or  ./configure --enable-mem-debug

  make

  make test           ### optional test if you want to run the test suite

  make testlong       ### optional more stringent tests, takes long time

will compile the core executables (see below) and place them in the bin/ subdirectory of the installation location you chose with the configure script (default will be saliency/bin/ in your working saliency directory). You should have zero errors and zero warnings.

  make core           ### just a few core programs if you get some errors
                      ### about missing libs when you just type "make".
                      ### The core programs should not require
                      ### unusual or exotics libs (like FireWire, etc)

  make all            ### build everything

If you run 'make test', be aware that some of the tests unfortunately rely on the specific way that Intel processors do floating-point computations; so if you're running on a different processor, you may see some test failures due to this fact.

There are additional targets for make, which will require some nonstandard software packages to compile. These include:

  make                -> only builds the base executables (into saliency/bin/)
  make base           -> same as above
  make core           -> builds only core programs that don't need funny libs
  make bot            -> builds beobot-related executables
  make mex            -> builds Matlab MEX files
  make gtk            -> builds GTK-dependent executables
  make sdl            -> builds SDL-dependent executables
  make qt             -> builds Qt-dependent executables
  make mpeg           -> builds MPEG-related executables
  make tprogs         -> builds test programs
  make all            -> builds everything except for mex
  make xml            -> builds all Xerces-C XML library dependent stuff
  make doc            -> builds the doxygen documentation into ../doc
  make doc-latex      -> builds the doxygen LaTeX doc into ../doc

See Makefile.in for the current list of possible targets.

On SMP machines, you may use the provided "mk" script (in saliency/bin/) to enable parallel compilation. For example (assuming that saliency/bin/ is in your path), typing:

  mk all

on a dual-CPU machine will make everything, running two jobs in parallel throughout the build process. On an n-CPU machine it will run n compilation jobs in parallel. mk passes all its arguments to make, so it has the same syntax.

4.2. Architecture & Operating System Issues

We use an autoconf-controlled build system (see the 4.5. Using autoconf to control the build process section below) to detect and handle OS differences, but currently most things are heavily aimed at Linux, and may not work at all under different systems (although with the configure script you should at least expect some message hinting at the reason for the failure). Most of the code should compile on other Unix architectures, including Mac OS X (10.2 or greater) and the Cygwin environment under Windows.

If you run into problems building the software on a non-Linux system, you might try the following types of modifications:

• different compiler and linker options
• system functions defined in different include files than those used (you will then get warnings about standard functions like printf() or time() being used but not declared; the man page for the corresponding function should tell you which include file to use if it is well written as it is under Linux, otherwise, you can try to locate the include file yourself using the 'find' unix command; for example "find /usr/include -name time.h -print")

If you are able to tweak things to get the software to build under a new system, please consider moving those tweaks into the configure.ac template script and contributing your changes back to our subversion repository, so that others with similar systems can benefit from your changes.

4.2.1 Building under Linux

The operating system principally used for development of the iLab Neuromorphic Vision C++ Toolkit is Mandriva Linux.

Under Mandriva, make sure that you setup the following media sources:

• main
• main_updates
• contrib
• contrib_updates
• non-free
• non-free-updates
• plf-free
• plf-nonfree

Then you can use the uprmi system to download and install additional packages and their dependencies automatically.

As of Mandriva 2009.1, the following packages should be installed (for a 64-bit distribution, you can easily guess the corresponding names for 32-bit):

  urpmi emacs
  urpmi tcl-devel
  urpmi tk-devel
  urpmi popt-devel
  urpmi bzip2-devel
  urpmi ffmpeg-devel
  urpmi fftw-devel
  urpmi gsl-devel
  urpmi blas-devel
  urpmi lapack-devel
  urpmi avc1394-devel

  # pick one, as they conflict...
  urpmi dc1394-devel
  urpmi lib64dc1394_22-devel

  urpmi raw1394-utils
  urpmi SDL-devel
  urpmi SDL_gfx-devel
  urpmi SDL_mixer-devel
  urpmi SDL_image-devel
  urpmi openmpi
  urpmi gd-devel
  urpmi readline-devel
  urpmi termcap-devel
  urpmi qwt-devel
  urpmi ode-devel
  urpmi cwiimote-devel
  urpmi bluez-devel
  urpmi qt3-devel

  urpmi opencv-devel

  # and don't forget the essentials:
  urpmi xv
  urpmi mencoder
  urpmi mplayer
  urpmi zsh

  # needed for ice 3.3.0 (in http://ilab.usc.edu/packages/forall/current/)
  urpmi db4.6
  urpmi lib64dbcxx4.6
  urpmi openssl (should be installed already)
  urpmi expat (should be installed already)
  rpm -Uvh ice-3.3.0-1.rhel5.noarch.rpm
  # In the command below, first run it without the --nodeps and make
  # sure you only get complaints about libcrypto, libssl and libdb,
  # all of which should be installed already, then
  rpm -Uvh --nodeps ice-c++-devel-3.3.0-1.rhel5.x86_64.rpm
    ice-libs-3.3.0-1.rhel5.x86_64.rpm
    ice-servers-3.3.0-1.rhel5.x86_64.rpm
    ice-utils-3.3.0-1.rhel5.x86_64.rpm

Some packages do not have readily available RPMs for Mandriva. Look in saliency/packages for .spec files to make these RPMs for your system yourself.

4.2.2 Building under Mac OS X

In order to get the most use out of the toolkit under Mac OS X, you will need to do two things:

• make sure you have installed the Mac OS X Developer Tools (also known as the Xcode from 10.3 onward), which you can install either from a separate Developer Tools CD that may have accompanied your shrinkwrapped copy of Mac OS X, or which you can download and install from Apple's web site (follow links from http://developer.apple.com/)

• install Fink (http://fink.sourceforge.net/), which is essentially a packaging system for ports of common unix/linux utilities to Mac OS X. With Fink you will be able to download and install many of the 3rd-party libraries that provide additional functionality for the programs in the iLab Neuromorphic Vision Toolkit. See http://fink.sourceforge.net/download/ for a "Quick Start" tutorial on Fink -- in particular, see the section on X11; you'll need to have either Apple's or Fink's X11 installed.

Here is an example of packages which I installed on a Leopard macbook, at svn revision 11488 of our code, using manual "fink install" commands (I said yes to install all dependencies when asked):

gcc42
sdl sdl-image sdl-mixer
libpng3
libjpeg
popt
qt3 qt3-designer
gsl
ffmpeg

then, if you allow yourself to install unstable fink packages from source, you can also get things like fftw3, a recent gcc compiler, etc

To list all installed Fink packages, do "fink list" from a terminal command line -- installed packages will be shown with a "i" at the beginning of the line. To give you some guidance in selecting packages for installation, one of our Mac OS X (10.3) systems has the following packages installed, and is able to build most of the programs in the toolkit:

anacron                 2.3-4            Periodic command scheduler
apr-ssl-shlibs          0.9.5-15         Apache Portable Runtime
apt                     0.5.4-37         Advanced front-end for dpkg
apt-shlibs              0.5.4-37         Advanced front-end for dpkg
arts                    1.1.4-22         KDE - analog realtime synthesizer
arts-shlibs             1.1.4-22         KDE - arts shared libraries
audiofile               0.2.6-10         Audio File Library *Developement Files*
audiofile-bin           0.2.6-10         Audio File Library *Binaries*
audiofile-shlibs        0.2.6-10         Audio File Library *Shared Libraries*
base-files              1.9.2-1          Directory infrastructure
bzip2                   1.0.2-12         Block-sorting file compressor
bzip2-dev               1.0.2-12         Developer files for bzip2 package
bzip2-shlibs            1.0.2-12         Shared libraries for bzip2 package
cctools                 525-1            [virtual package representing the developer tools]
cctools-extra           1:495-3          Extra software from cctools
cctools-single-module   1.0-1            [virtual package, your dev tools support -single_module]
ctan-other-misc         1.0-1            LaTeX macros from CTAN contrib/other/misc directory
cvs                     1.11.17-1        Version control system
cyrus-sasl2-shlibs      2.1.15-23        Cyrus Simple Authentication and Security Layer Library
daemonic                20010902-2       Interface to daemon init scripts
darwin                  7.9.0-1          [virtual package representing the kernel]
db42-ssl-shlibs         4.2.52-12        Shared Libraries for db42-ssl
debianutils             1.23-11          Misc. utilities specific to Debian (and Fink)
detex                   2.7-2            Filter to strip TeX commands from a .tex file
diffutils               2.8.1-1          Tools to compare files
dosunix                 1.0.13-1         Converts DOS text files to unix text format
dpkg                    1.10.21-202      The Debian package manager
emacs21                 21.2-26          Flexible real-time text editor, v21.2 with X11 support
emacsen-common          1.4.13-2         Common facilities for all emacsen
esound                  0.2.32-4         Enlightened Sound Daemon
esound-bin              0.2.32-4         Enlightened Sound Daemon
esound-common           0.2.32-4         Enlightened Sound Daemon
esound-shlibs           0.2.32-4         Enlightened Sound Daemon
expat-shlibs            1.95.7-1         C library for parsing XML
file                    3.41-1           Determine file type (magic)
fileutils               4.1-4            Common shell commands like ls, touch, chmod
fink                    0.21.3-1         The Fink package manager
fink-mirrors            0.21.1.1-1       Mirror infrastructure
fink-prebinding         0.7.1-2          Tools for enabling prebinding in Fink
gawk                    3.1.2-12         The Awk processing language, GNU edition
gcc2                    2.95.2-1         [virtual package representing the gcc 2.95.2 compiler]
gcc2.95                 2.95.2-1         [virtual package representing the gcc 2.95.2 compiler]
gcc3.1                  3.1-1            [virtual package representing the gcc 3.1 compiler]
gcc3.3                  3.3-1            [virtual package representing the gcc 3.3 compiler]
gdbm3-shlibs            1.8.3-1          Shared libraries for gdbm3 package
gettext                 0.10.40-18       Message localization support
gettext-bin             0.10.40-18       Executables for gettext package
gettext-dev             0.10.40-18       Developer files for gettext package
ghostscript             8.00-3           Interpreter for PostScript and PDF
ghostscript-fonts       6.0-3            Standard fonts for Ghostscript
gimp-print-shlibs       4.2.5-1          [virtual package representing Apple's install of Gimp Print]
glib                    1.2.10-18        Common C routines used by Gtk+ and other libs
glib-shlibs             1.2.10-18        Common C routines used by Gtk+ and other libs
glib2-shlibs            2.2.3-2          GTK+ - low-level core libraries
gmp-shlibs              4.1.2-11         Shared libraries for gmp package
gnupg                   1.2.4-1          Gnu privacy guard - A Free PGP replacement
grep                    2.4.2-3          Search text files for patterns
gtk+                    1.2.10-27        The Gimp Toolkit
gtk+-data               1.2.10-27        The Gimp Toolkit
gtk+-shlibs             1.2.10-27        The Gimp Toolkit
gzip                    1.2.4a-6         The gzip file compressor
ifmslide                0.45-4           Powerful presentations with PDFLaTeX and LaTeX
imagemagick             5.5.1-23         Image manipulation tools
kdebase3-ssl            3.1.4-21         KDE - base system
kdebase3-ssl-shlibs     3.1.4-21         KDE - base shared libraries
kdegames3-base          3.1.4-21         KDE - kdegames base package
kdegames3-common        3.1.4-21         KDE - game shared libraries
kdelibs3-ssl            3.1.4-22         KDE - essential libraries
kdelibs3-ssl-shlibs     3.1.4-22         KDE - essential shared libraries
kshisen                 3.1.4-21         KDE - Shisen-So - a Mah Jong-like game
latex2html              2002-2-1-1       Converts LaTeX documents to HTML
lcms-shlibs             1.12-1           Free color management engine in 100K
less                    381-10           Featureful text pager
lesstif-shlibs          1:0.93.18-1      Free implementation of OSF/Motif
libart2-shlibs          2.3.16-2         Library for high-performance 2D graphics
libiconv                1.9.1-11         Character set conversion library
libiconv-bin            1.9.1-11         Executables for libiconv package
libiconv-dev            1.9.1-11         Developer files for libiconv package
libjpeg                 6b-16            JPEG image format handling library
libjpeg-bin             6b-16            Executables for libjpeg package
libjpeg-shlibs          6b-16            Shared libraries for libjpeg package
libmad-shlibs           0.15.0b-2        MPEG audio decoder library
libogg-shlibs           1.1-1            Ogg bitstream shared libraries
libpng3                 1:1.2.5-2        PNG image format handling library
libpng3-shlibs          1:1.2.5-2        Shared libraries for libpng3 package
libtiff                 3.6.1-1          TIFF image format library and tools
libtiff-bin             3.6.1-1          Executables for libtiff package
libtiff-shlibs          3.6.1-1          Shared libraries for libtiff package
libvorbis0-shlibs       1.0.1-1          Vorbis audio codec shared libraries
libwww-bin              5.3.2-4          General-purpose Web API written in C for Unix and Windows
libwww-shlibs           5.3.2-4          General-purpose Web API written in C for Unix and Windows
libxml2-bin             2.6.7-2          XML parsing library, version 2
libxml2-shlibs          2.6.7-2          XML parsing library, version 2
libxslt-shlibs          1.1.4-3          XML stylsheet transformation shared libraries
m4                      1.4-6            Advanced macro processing language
macosx                  10.3.9-1         [virtual package representing the system]
make                    3.79.1-3         Software build tool
ncurses                 5.3-20031018-2   Full-screen ascii drawing library
ncurses-dev             5.3-20031018-2   Development files for ncurses package
ncurses-shlibs          5.3-20031018-2   Shared libraries for ncurses package
neon24-ssl-shlibs       0.24.7-11        HTTP/WebDAV client library with a C API
netpbm-bin              10.12-3          Graphics manipulation programs and libraries
netpbm10                10.12-3          Graphics manipulation programs and libraries
netpbm10-shlibs         10.12-3          Graphics manipulation programs and libraries
nget                    0.23-2           Downloader for binary news postings
openldap-ssl-shlibs     2.1.22-25        Shared libraries for LDAP
openslp-ssl-shlibs      1.0.9a-4         Shared Libraries for OpenSLP + SSL Support
openssh                 3.7.1p1-1        Secure shell (remote login) client and server
openssl                 0.9.6m-11        Secure Sockets Layer and general crypto library
openssl-shlibs          0.9.6m-11        Secure Sockets Layer and general crypto library
openssl097-shlibs       0.9.7d-1         Secure Sockets Layer and general crypto library
patch                   2.5.4-2          Utility to apply patches to source trees
pcre-shlibs             4.2-2            Perl Compatible Regular Expressions Library
pdfscreen               1.5-6            Resize LaTeX-produced pdf to fit on computer screen
popt                    1.7-3            Library for parsing command line options
popt-shlibs             1.7-3            Library for parsing command line options
ppower4                 0.9.4-1          Post-processor for PDF presentations created by pdf(La)TeX
python23                1:2.3.3-23       Interpreted, object-oriented language
python23-shlibs         1:2.3.3-23       Interpreted, object-oriented language
python23-socket         1:2.3.3-23       Socket plugin for python
python23-socket-ssl     1:2.3.3-23       Socket plugin for python (SSL version)
qt3                     3.2.2-12         Cross-Platform GUI application framework
qt3-designer            3.2.2-12         Cross-Platform GUI application framework
qt3-doc                 3.2.2-12         Cross-Platform GUI application framework
qt3-linguist            3.2.2-12         Cross-Platform GUI application framework
qt3-shlibs              3.2.2-12         Cross-Platform GUI application framework
readline                4.3-25           Comfortable terminal input library
readline-shlibs         4.3-25           Comfortable terminal input library
rsync                   2.5.5-1          Synchronize filesystems between hosts
sdl                     1.2.7-1          Cross-platform multimedia library
sdl-image               1.2.3-1          SDL image file loading library
sdl-image-shlibs        1.2.3-1          SDL image file loading library
sdl-mixer               1.2.5-12         SDL multi-channel audio mixer library
sdl-mixer-shlibs        1.2.5-12         SDL multi-channel audio mixer library
sdl-shlibs              1.2.7-1          Cross-platform multimedia library
sed                     4.0.5-1          The stream editor, GNU version
smpeg-shlibs            0.4.4-25         SDL MPEG Player Library
storable-pm             1.0.14-7         Placeholder for versioned Storable packages
swig-shlibs             1.3.20-11        Tool that connects C, C++ programs with high-level languages
system-java             1.4.2-1          [virtual package representing Java 1.4.2]
system-java13           1.3.1-1          [virtual package representing Java 1.3.1]
system-java13-dev       1.3.1-1          [virtual package representing Java 1.3.1 development headers]
system-java14           1.4.2-1          [virtual package representing Java 1.4.2]
system-java14-dev       1.4.2-1          [virtual package representing Java 1.4.2 development headers]
system-perl             5.8.1-1          [virtual package representing perl]
system-xfree86          2:4.3-2          [placeholder for user installed x11]
system-xfree86-dev      2:4.3-2          [placeholder for user installed x11 development tools]
system-xfree86-shlibs   2:4.3-2          [placeholder for user installed x11 shared libraries]
t1lib1-shlibs           1.3.1-2          Shared libs for generating Type 1 Font bitmaps
tar                     1.13.25-12       GNU tar - tape archiver
tcltk                   8.4.1-12         Tool Command Language and the Tk toolkit
tcltk-dev               8.4.1-12         Tool Command Language and the Tk toolkit
tcltk-shlibs            8.4.1-12         Tool Command Language and the Tk toolkit
tetex                   2.0.2-36         Complete distribution of the TeX typesetting system
tetex-base              2.0.2-36         Base programs for a teTeX installation
tetex-shlibs            2.0.2-36         Shared libraries for a teTeX installation
tetex-texmf             2.0.2-2          Main texmf tree for a teTeX installation
tex4ht                  20030412-10      TeX to Hypertext translator
texinfo                 4.7-11           Texinfo documentation system
texpower                0.0.8h-1         Creating dynamic online presentations with LaTeX
type1inst               0.6.1-3          Type 1 PostScript font installation utility
unrar                   3.3.5-21         RAR archive decoder
unzip                   5.50-14          Decompression compatible with pkunzip
wget                    1.8.2-2          Automatic web site retreiver
xfontpath               0.4-12           X font path manager for fink

Once you have the Xcode/Developer Tools and Fink installed, you can build the toolkit from a terminal window (/Applications/Utilities/Terminal.app) using the standard ./configure and make sequence shown in 4.1. Basic compilation.

4.2.3 Building under Windows in the Cygwin environment

In order to build the toolkit under Windows, you will need to install a Cygwin environment (http://www.cygwin.com/), which provides a unix-style development environment.

To install cygwin, essentially you need to download the program setup.exe from http://www.cygwin.com/, then run the setup.exe program which will guide you through selecting a set of packages to install. You can always go back and re-run setup.exe if you find you need to install additional packages later on, or if you want to upgrade your packages to the latest version.

To list all installed packages, do "cygcheck -c -d" from a cygwin bash shell. To give you some guidance in selecting packages for installation, one of our Windows systems has the following packages installed, and is able to build most of the programs in the toolkit:

_update-info-dir        00349-1
agetty                  2.1-1
alternatives            1.3.20a-2
apache                  1.3.33-2
apr                     0.9.7-1
apr-util                0.9.7-1
ash                     20040127-3
astyle                  1.15.3-3
atk                     1.9.1-1
atk-devel               1.9.1-1
atk-doc                 1.9.1-1
atk-runtime             1.9.1-1
autoconf                2.59-2
autoconf-devel          2.59-2
autoconf-stable         2.13-6
autoconf2.1             2.13-1
autoconf2.5             2.59-2
automake                1.7.9-2
automake-devel          1.9.2-2
automake-stable         1.4p6-3
automake1.4             1.4p6-2
automake1.9             1.9.6-1
autossh                 1.3-2
base-files              3.7-1
base-passwd             2.2-1
bash                    3.0-14
bc                      1.06-2
binutils                20050610-1
bison                   20030307-1
byacc                   1.9-1
bzip2                   1.0.3-1
c-client                2002e-3
c3270                   3.2.20-1
cabextract              1.1-1
ccache                  2.2-1
ccdoc                   0.8.41-2
ccrypt                  1.7-1
check                   0.9.1-1
chere                   0.6-3
chkconfig               1.2.24h-1
clamav                  0.87.1-1
clear                   1.0-2
clisp                   2.38-1
cmake                   2.2.3-2
cocom                   0.995-1
compface                1.5.2-1
coreutils               5.93-3
cpio                    2.6-5
cppunit                 1.9.14-1
cron                    3.0.1-19
crypt                   1.1-1
ctags                   5.5-4
curl                    7.15.1-1
curl-devel              7.15.1-1
cvs                     1.11.17-1
cygipc                  2.03-2
cygrunsrv               1.12-1
cygutils                1.2.9-1
cygwin                  1.5.19-4
cygwin-doc              1.4-3
cyrus-sasl              2.1.19-3
d                       1.2.0-1
ddd                     3.3.9-1
dejagnu                 20021217-2
desktop-file-utils      0.10-1
diffstat                1.40-1
diffutils               2.8.7-1
distcc                  2.18.3-1
doxygen                 1.4.6-1
dpkg                    1.10.4-2
e2fsimage               0.2.0-2
e2fsprogs               1.35-3
ed                      0.2-1
editrights              1.01-1
ELFIO                   1.0.2-1
emacs                   21.2-13
emacs-el                21.2-13
emacs-X11               21.2-13
esound                  0.2.36-1
expat                   1.95.8-1
expect                  20030128-1
fftw3                   3.0.1-2
fftw3-dev               3.0.1-2
fftw3-doc               3.0.1-2
file                    4.16-1
fileutils               4.1-3
findutils               4.2.27-1
flex                    2.5.4a-3
fltk                    1.1.4-2
fontconfig              2.2.2-1
freeglut                2.2.0-1
freetype2               2.1.9-1
gawk                    3.1.5-2
gcc                     3.4.4-1
gcc-ada                 3.4.4-1
gcc-core                3.4.4-1
gcc-g++                 3.4.4-1
gcc-g77                 3.4.4-1
gcc-gdc                 3.4.4-1
gcc-gpc                 3.3.3-3
gcc-java                3.4.4-1
gcc-mingw               20040810-1
gcc-mingw-ada           20050522-1
gcc-mingw-core          20050522-1
gcc-mingw-g++           20050522-1
gcc-mingw-g77           20050522-1
gcc-mingw-gdc           20050522-1
gcc-mingw-gpc           20040810-1
gcc-mingw-java          20050522-1
gcc-mingw-objc          20050522-1
gcc-objc                3.4.4-1
gdb                     20041228-3
gdbm                    1.8.3-7
gettext                 0.14.5-1
gettext-devel           0.14.5-1
ghostscript             8.15-2
ghostscript-base        8.15-2
ghostscript-x11         8.15-2
glib                    1.2.10-3
glib-devel              1.2.10-3
glib2                   2.6.6-2
glib2-devel             2.6.6-2
glib2-runtime           2.6.6-2
gmp                     4.1.4-2
gnome-common            2.12.0-1
gnome-keyring           0.4.6-1
gnome-mime-data         2.4.2-1
gnupg                   1.4.1-1
gperf                   2.7.2-1
grep                    2.5.1a-2
groff                   1.18.1-2
gtk+-devel              1.2.10-2
gtk-doc                 1.3-1
gtk2-x11                2.6.10-1
gtk2-x11-devel          2.6.10-1
gtk2-x11-doc            2.6.10-1
gtk2-x11-runtime        2.6.10-1
guile                   1.6.7-4
guile-devel             1.6.7-4
guile-doc               1.6.7-4
gzip                    1.3.5-1
help2man                1.35.1-1
indent                  2.2.9-1
inetutils               1.3.2-35
initscripts             0.9-1
intltool                0.33-1
ioperm                  0.4-1
irc                     20010101-3
jasper                  1.701.0-1
jbigkit                 1.5-3
jpeg                    6b-11
keychain                2.5.3.1-1
lablgtk2                2.4.0-2
lcms                    1.14-1
less                    381-1
lesstif                 0.93.94-2
lftp                    2.6.10-2
libapr0                 0.9.7-1
libaprutil0             0.9.7-1
libart_lgpl             1.4.2-3
libart_lgpl2            2.3.17-1
libaudiofile-devel      0.2.6-2
libaudiofile0           0.2.6-2
libbonobo2              2.10.1-1
libbonobo2-devel        2.10.1-1
libbonobo20             2.10.1-1
libbz2_1                1.0.3-1
libcharset1             1.9.2-2
libcroco06              0.6.0-1
libcurl3                7.15.1-1
libdb4.1                4.1.25-1
libdb4.2                4.2.52-1
libdb4.3                4.3.28-1
libesound-devel         0.2.36-1
libesound0              0.2.36-1
libfontconfig-devel     2.2.2-1
libfontconfig1          2.2.2-1
libfpx                  1.2.0.12-1
libfreetype2-devel      2.1.9-1
libfreetype26           2.1.9-1
libgcrypt               1.2.1-1
libgdbm                 1.8.0-5
libgdbm-devel           1.8.3-7
libgdbm3                1.8.3-3
libgdbm4                1.8.3-7
libgettextpo0           0.14.5-1
libglade2               2.5.1-1
libgnomecanvas2         2.10.2-1
libgpg-error            1.1-1
libGraphicsMagick-devel 1.0.6-1
libGraphicsMagick0      1.0.6-1
libguile12              1.6.7-4
libguile16              1.7.1.20041006-1
libiconv                1.9.2-2
libiconv2               1.9.2-2
libIDL                  0.5.17-2
libIDL2                 0.8.6-1
libintl                 0.10.38-3
libintl1                0.10.40-1
libintl2                0.12.1-3
libintl3                0.14.5-1
libjpeg62               6b-11
libjpeg6b               6b-8
libkpathsea3            2.0.2-15
libkpathsea4            3.0.0-3
libltdl3                1.5.20-2
libltdl6                1.9f_20041024-1
libMagick-devel         6.0.4-1
libMagick6              6.0.4-1
libncurses-devel        5.4-4
libncurses5             5.2-1
libncurses6             5.2-8
libncurses7             5.3-4
libncurses8             5.4-4
libneon24               0.24.7-2
libneon25               0.25.5-1
libnetpbm10             10.30-1
libopenldap2            2.1.25-1
libopenldap2_2_7        2.2.26-2
libpcre                 4.1-2
libpcre0                6.3-1
libpng                  1.2.8-2
libpng12                1.2.8-2
libpng12-devel          1.2.8-2
libpopt0                1.6.4-4
libreadline4            4.1-2
libreadline5            4.3-5
libreadline6            5.1-1
libsasl2                2.1.19-3
libsasl2-devel          2.1.19-3
libsmi                  0.4.2-1
libtiff-devel           3.7.3-1
libtiff4                3.6.0-5
libtiff5                3.7.3-1
libtool                 1.5b-2
libtool-devel           1.5.10-2
libtool-stable          1.4.3-3
libtool1.5              1.5.20-2
libungif                4.1.4-1
libungif4               4.1.4-1
libwnck                 2.8.1-1
libXft                  2.1.6-1
libXft-devel            2.1.6-1
libXft1                 1.0.0-1
libXft2                 2.1.6-1
libxml2                 2.6.22-1
libxml2-devel           2.6.22-1
libxml2-python          2.6.22-1
libxslt                 1.1.15-2
lighttpd                1.4.9-1
login                   1.9-7
m4                      1.4.4-1
make                    3.80-1
man                     1.5p-1
mc                      4.6.1-2
mingw-runtime           3.9-2
minires                 1.00-1
minires-devel           1.00-1
mktemp                  1.5-3
more                    2.11o-2
mt                      2.3.1-1
naim                    0.11.8.1-1
nano                    1.2.2-1
nasm                    0.98.39-1
ncftp                   3.1.7-1
ncurses                 5.4-4
nedit                   5.5-1
neon                    0.25.5-1
netcat                  1.10-2
netpbm                  10.30-1
ocaml                   3.08.1-1
openjade                1.3.3-1
openldap                2.2.26-2
openldap-devel          2.2.26-2
OpenSP                  1.5.1-1
openssh                 4.2p1-1
openssl                 0.9.8a-1
openssl-devel           0.9.8a-1
openssl097              0.9.7i-1
ORBit2                  2.12.3-1
ORBit2-devel            2.12.3-1
pango                   1.8.1-1
pango-devel             1.8.1-1
pango-doc               1.8.1-1
pango-runtime           1.8.1-1
patch                   2.5.8-8
patchutils              0.2.31-1
pcre                    6.3-1
pcre-devel              6.3-1
pcre-doc                6.3-1
pdksh                   5.2.14-3
perl                    5.8.7-5
perl-libwin32           0.26-1
ping                    1.0-1
pkgconfig               0.17.2-2
popt                    1.6.4-4
postgresql              8.0.4-1
pr3270                  3.2.20-1
procps                  3.2.5-1
proftpd                 1.2.10-1
python                  2.4.1-1
qt3                     3.3.4-2
qt3-bin                 3.3.4-2
qt3-devel               3.3.4-2
qt3-doc                 3.3.4-2
rcs                     5.7-3
readline                5.1-1
rebase                  2.4.2-1
rpm                     4.1-2
rpm-build               4.1-1
rpm-doc                 4.1-1
rsync                   2.6.6-1
ruby                    1.8.4-1
run                     1.1.6-1
rxvt                    2.7.10-6
s3270                   3.2.20-1
sed                     4.1.4-1
setsid                  0.0-3
sh-utils                2.0.15-5
shared-mime-info        0.16-1
sharutils               4.5.3-1
shutdown                1.7-1
splint                  3.1.1-1
startup-notification    0.8-1
stunnel                 4.14-2
subversion              1.2.3-1
subversion-devel        1.2.3-1
suite3270               3.2.20-1
SWI-Prolog              5.2.6-1
swig                    1.3.25-1
sysvinit                2.84-4
t1lib                   5.1.0-1
tar                     1.15.1-3
tcl3270                 3.2.20-1
tcltk                   20030901-1
tcm                     2.20-1
tcp_wrappers            7.6-1
tcsh                    6.14.00-5
termcap                 20050421-1
terminfo                5.4_20041009-1
tetex-base              3.0.0-3
tetex-bin               3.0.0-3
tetex-devel             3.0.0-3
tetex-extra             3.0.0-3
texinfo                 4.8-1
TeXmacs                 1.0.6-1
textutils               2.0.21-2
time                    1.7-1
tin                     1.8.0-1
transfig                3.2.4-2
ttcp                    19980512-1
tzcode                  2005r-2
unison                  2.10.2-4
units                   1.77-1
unzip                   5.50-5
upx                     1.24-1
uw-imap                 2002e-3
vim                     6.4-4
w32api                  3.6-1
which                   1.7-1
whois                   4.7.11-1
WordNet                 2.0-1
X-startup-scripts       1.0.11-1
x3270                   3.2.20-1
Xaw3d                   1.5D-5
xemacs                  21.4.18-2
xemacs-emacs-common     21.4.18-2
xemacs-mule-sumo        2005-12-08-1
xemacs-sumo             2005-12-08-1
xemacs-tags             21.4.18-2
xerces-c-devel          2.5.0-1
XFree86-lib-compat      4.3.0-2
xinetd                  2.3.9-1
xorg-x11-base           6.8.2.0-1
xorg-x11-bin            6.8.2.0-1
xorg-x11-bin-dlls       6.8.2.0-1
xorg-x11-bin-lndir      6.8.2.0-1
xorg-x11-devel          6.8.2.0-2
xorg-x11-etc            6.8.2.0-1
xorg-x11-f100           6.8.1.0-3
xorg-x11-fenc           6.8.1.0-2
xorg-x11-fnts           6.8.1.0-3
xorg-x11-fscl           6.8.1.0-2
xorg-x11-fsrv           6.8.2.0-1
xorg-x11-libs-data      6.8.2.0-1
xorg-x11-man-pages      6.8.2.0-1
xorg-x11-xwin           6.8.2.0-4
xpdf                    3.01-1
xterm                   202-1
zip                     2.3-6
zlib                    1.2.3-1
zsh                     4.2.6-1

Once you have a cygwin environment installed, you can build the toolkit from cygwin shell window using the standard ./configure and make sequence shown in 4.1. Basic compilation.

If you want to use any of the tcl-based apps (e.g., bin/invt), you may get an error like the following:

fatal initialization error (package 'Tcl'):
        Can't find a usable init.tcl in the following directories:

In that case, you need to set the TCL_LIBRARY environment variable, either on the command-line or in your ~/.bashrc, like so:

export TCL_LIBRARY="C:/cygwin/usr/share/tcl8.4"

4.3. Parallel code notes

NOTE: PVM SUPPORT HAS BEEN OBSOLETED AND REMOVED AT SVN REVISION 8264.

You need to install PVM (Parallel Virtual Machine), a supercomputing message passing toolkit from Oak Ridge National Laboratory (www.epm.ornl.gov/pvm/pvm_home.html) for 'pvision' and 'pvision-master' to compile. These two programs implement our model of bottom-up, saliency-based visual attention to run on a cluster of Linux machines connected through a high-speed network. These two programs are rather obsolete as better versions are now available that do not require PVM (pvisionTCP, pvisionTCP2, etc). If you do not wish to install PVM and to compile those two programs, don't try "make pvm".

Note that "make pvm" is implicitly called by "make all" so you will need to have PVM installed for "make all" to work.

4.4. IEEE-1394, SDL, ffmpeg, and other libs code notes

You will need the FireWire development libs for the IEEE1394 code to compile properly. On Mandrake 9.0, that means that you will need to install:

libdc1394_0-0.9.0-1mdk.i586.rpm
libdc1394_0-devel-0.9.0-1mdk.i586.rpm
libraw1394_5-0.9.0-2mdk.i586.rpm
libraw1394_5-devel-0.9.0-2mdk.i586.rpm

or later versions. That will allow the code to compile. To run it, you will in addition need to (as root):

        mknod -m 777 /dev/raw1394 c 171 0
        mkdir /dev/video1394
        mknod -m 777 /dev/video1394/0 c 171 16

        modprobe ohci1394
        modprobe raw1394
        modprobe video1394

You will need SDL development libs for the SDL-related code to compile, ffmpeg libs to the MPEG-related code, etc. It can be a long and frustrating process to find and install all the packages needed for "make all" to succeed. To help you, please see:

http://iLab.usc.edu/packages/

which contains the list of "exotic" packages we have installed on our machines so that "make all" will work.

4.5. Using autoconf to control the build process

4.5.1. If you are just going to build the software

The first thing you'll notice is that there is no Makefile in the subversion repository! This is because we have a configure script that checks various features of the build environment (i.e. your computer), and uses that information to generate a Makefile from a Makefile.in template. In addition, the configure script allows you to toggle additional switches controlling how the build will be done.

To see the list of available configuration options:

  ./configure --help

To run the configure script, just type ./configure. In general, if you don't specify any additional options to ./configure, you'll just get the right default behavior (for old-timers: similar to what we got previously from the old Makefile).

4.5.2. If you need to edit or add to the Makefile

Then the most important thing is DON'T EDIT THE FILE CALLED "Makefile"!!!

(Sorry to yell ;) but I find that that is the hardest part to remember of the entire autoconf process...)

Instead, you should edit "Makefile.in". This is the template file that ./configure uses to generate the Makefile. You'll find that Makefile.in looks very familiar. The main differences are:

• at the top of Makefile.in there are a bunch of lines like this:

      CXX := @CXX@

those are the lines where the configure script substitutes in the information it has garnered from its various checks. You won't need to worry about these unless you're also editing the configure script (then see step 3 below).

• instead of hardcoding the installation location for executables as "../bin", we now use "$(exec_prefix)/bin", which allows the user to specify a different installation location via the --prefix or --exec-prefix options to the configure script (but the default exec_prefix is still "..", so the default installation location is "../bin".

4.5.3. If you need to change the configure script

Then, just like the Makefile, DON'T EDIT THE FILE CALLED "configure"!!!

Instead, you should edit "configure.ac". This file is processed by the autoconf program to generate the configure script.

Next most important, if you change "configure.ac" and commit changes back to the subversion repository, then AFTERWARDS you MUST also run autoconf again, and then 'svn commit' the generated "configure" script. Here's why:

• Most people don't need to modify the configure.ac script. Therefore we don't want to require them to have autoconf installed on their system. Therefore they need to have access to the generated "configure" script, which is itself very highly portable bourne shell code. Therefore, we always need to have the most recent version of the "configure" script available on the svn server.

• It's important that you 'svn commit' the generated "configure" script AFTER the corresponding commit of "configure.ac", so that the timestamps are correct on the files. That's because the makefile has a rule to regenerate configure from configure.ac. But, we don't want that rule to get triggered unnecessarily. Therefore we need to make sure that, in the subversion repository, "configure" always has a later timestamp than "configure.ac".

• By convention, you don't need to put anything substantial in the svn log message for "configure"; in fact the best thing is to put something like "From configure.ac revision 4567", so we can always see which revisions correspond between the two files.

The configure.ac file itself is an m4-macroized version of bourne shell code. So you can put any bourne shell code into configure.ac, as long as its portable (i.e. shouldn't rely on bash-specific extensions). m4 is a macro language, just like the C preprocessor, except on steroids. The autoconf distribution basically consists of a large set of m4 macros that help you do useful tests.

You can read more about autoconf here:

• http://www.gnu.org/software/autoconf/autoconf.html
• http://www.gnu.org/manual/autoconf/index.html

Running autoconf is very simple. You just type "autoconf". It looks for a file named "configure.ac" (or "configure.in", the older deprecated name for the script template), then does its m4-processing business, and writes the results to "configure". If all goes well, you'll see no messages.

Our configure.ac template requires autoconf 2.53 or later. In particular, it won't work with autoconf 2.13, which is still the default in some distros, although recent distros should at least have autoconf 2.53 available.

BE WARNED: Just because autoconf runs successfully does not mean that your configure script will be syntactically correct bourne shell code. All the autoconf does is run the m4 processor over your template. Therefore you should always try running the generated configure script to make sure there are no shell script syntax errors, before you 'svn commit' changes to "configure.ac".

Here's a quick overview of what happens in the configure.ac file:

• You'll notice two kinds of comments: those starting with "#", and those starting with "dnl". The "#" comments will be carried over intact into the generated "configure" file, while the "dnl" comments will be discarded by m4.

• The autoconf macros are easy to spot as they're all in all caps and the all start with AC_.

• Quoting in m4 is done with square brackets []. This is a bit of black magic. Nobody is really sure how many levels of quotes you should have. Conventional wisdom is: "if it doesn't work, add another level of quotes". In general, all arguments to macros should be quoted, even if they're a single word, or the result of another macro call. This is to avoid m4 getting overeager about what it tries to macro-process.

• configure.ac must start with AC_INIT() to specify the name of the project, its version number, an email address for bug reports, and a short name to be used in generated tar.gz distros.

• Near the end of the file will be one or more AC_CONFIG_FILES() calls. These tell the script that it should generated the named files by substituting all of the "output variables" (see below) into the corresponding template file. For example AC_CONFIG_FILES([Makefile:Makefile.in]) causes Makefile to be generated by doing output-variable-substitution in Makefile.in.

• The script builds a number of "output variables", which are variables that will be substituted during AC_CONFIG_FILES() calls. Some of the output variables are managed more or less automatically; these include:
  • the names of the C and C++ compilers (CC and CXX) These are computed by AC_PROG_CC() and AC_PROG_CXX().
  • the C preprocessor flags (CPPFLAGS) -- e.g. -I options to gcc
  • C preprocessor definitions (DEFS) -- a list of -D options
  • the C compiler flags (CFLAGS)
  • the C++ compiler flags (CXXFLAGS)
  • the linker flags (LDFLAGS)
  • the libraries to be linked in to executables (LIBS) This is manipulated by AC_CHECK_LIB(), for example.

• In general, the idea is that you don't add something to one of the variables until you know that it works. That is, don't add a library to LIBS until you've checked that the library is present and working. Autoconf macros are designed to make these checks very simple.

• In general you need to do the checks in the order of least dependent to most dependent, since autoconf uses the various CPPFLAGS/CXXFLAGS/LIBS variables as it runs its tests. That is, if libfoo depends on libbar, then you need to check for libbar first. If libbar is present, then autoconf will add -lbar to LIBS. Then when you check for libfoo, it's dependence on libbar will already be satisfied.

• To add a -D option to the DEFS output variable, use AC_DEFINE()

• To your own variable into an output variable, call AC_SUBST() with the variable's name.

• To add a switch that the user can give as a command-line option to configure, use AC_ARG_ENABLE(). Probably best for you to read the docs if you need to use this, rather than for me to try to explain it... (or take a look at some of the existing usages in our own configure.ac).

• To add a macro that has already been written, you can place it in the acsite.m4 file, which will get included with configure.ac when running autoconf. You can examine the file to see how the autoqt macro (http://autoqt.sourceforge.net) was added.

4.6. Qt3 code notes

We are developing GUI applications for the Toolkit and some of these programs will depend on Qt, a very easy-to-use library that has cross-platform support, includes a powerful visual Designer software, and significantly reduces the amount of code necessary to create user interfaces (less than Xlib or Gtk). Qt has extensive documentation and widespread popularity throughout the open source community. Qt is released under GPL and is available for download from http://www.trolltech.com/

Also, if you are running KDE, you should have Qt already installed because KDE is a very well-known Qt-based desktop environment.

To code with Qt3, please follow these instructions:

• Qt3 applications usually need the user to work with three types of files:
  1. ui files written in XML that describe the user interface -- can be automatically generated by Qt Designer
  2. ui.h files with additional code for setting up signals/slots and extending widgets -- Qt Designer will help set up the framework of these files
  3. cpp files, one of which is a generic main() function that you can freely modify -- Qt Designer can provide you with a barebones version, but you are better off writing it yourself or basing it on one of the existing ones

• Source code for Qt3 applications need to be placed in the saliency/src/Qt directory. This includes all three kinds of files mentioned above.

• Some of the files in the saliency/src/Qt directory are helpers that convert between formats recognized by Qt and those used in the rest of this toolkit. You can use these by including the appropriate header (e.g., include "ImageConvertQt.H")

• Qt3 Designer will be very helpful for creating user interfaces and setting up the signals/slots interaction system. Qt3 Designer also includes Qt Assistant, which will direct you to the extensive Qt documentation available.

Compile notes for Qt3 applications:

• configure will check for Qt3 libraries on your machine and export the appropriate directory where Qt3 sources and binaries reside.

• Makefile.in has an option for "make qt" which will build Qt-dependent executables.

• Qt3 executables should go in depoptions.in just like any other programs. Make sure to use the "--exeformat qt" option.

• The make process will generate dependency information based on the source files present. However, some of this dependency information is only available after the intermediary source files created by the Qt3 User Interface Compiler (uic) have been generated. Thus, for the first time you build the program, you need to do the following (assume you have user interface files MyForm.ui and MyForm.ui.h):

       make src/Qt/ui/MyForm.h
       make src/Qt/ui/MyForm.cpp
  

  After these files are created for the first time, they should not be removed so that the cdeps dependency generator can refer to them. However, you should not have to ever edit them since they will always be created automatically by uic.

• By default, make will keep intermediary source files in the src/Qt/ui directory. The corresponding object code will be built into build/obj/Qt/ui.

• IMPORTANT -- when adding a new Qt user interface to the svn repository, it will be necessary to also include the files that were created just for the sake for generating dependencies. If you created an interface called MyForm, all of the following files will need to be added to svn:

       svn add src/Qt/MyForm.ui
       svn add src/Qt/MyForm.ui.h
       svn add src/Qt/ui/MyForm.h
       svn add src/Qt/ui/Myform.cpp
  

  Do not worry about the object files, those are ignored by svn and will have no effect.

• Note #1: Although Trolltech recommends using qmake to build Qt projects, we do not use it because it is difficult to pass on dependency information to it.

• Note #2: The basic outline of the make process for Qt applications is available at:

  http://doc.trolltech.com/3.2/designer-manual-9.html#3-1

  It can also be found in the corresponding section of the Qt Assistant. See "Creating Makefiles without qmake" under Qt Designer manual, "Customizing and Integrating Qt Designer."

• Note #3: We run moc (Qt's Meta-Object Compiler) on the fly when compiling files with .cpp or .Q extensions. Previously, we used to store the moc_*.cpp files in the repository, but this is no longer necessary. However, by running moc on the fly, we minimize dependency bookkeeping and avoid churn in the svn repository, at the expense of very little compile time (e.g., moc usually takes <0.5s to run, while compiling the .cpp file itself typically takes ~10-20s for Qt source code).

As an example you should look at the simple application test-Qt, which was created almost entirely in Qt Designer and required only about 25 additional lines of code to be written by the programmer. This should demonstrate both the power and the simplicity of Qt.

4.7. Qt4 code notes

The workflow for Qt4 is significantly different than that of Qt3, especially as regards the use of the Qt Designer. Have a look here for porting info:

http://qt.nokia.com/doc/4.6/porting4-designer.html

Here is what you should do to create new Qt4 projects:

• using the Qt4 designer, you create a foo.ui file; add it to the svn repo. A good place to store this file is in src/Qt4/ but it does not have to, it could be in some other directory for your project.

• then run

  make src/WhereTheUIfileIs/foo.ui.H

which will pass your .ui file through uic and obtain foo.ui.H; you should add it to the svn repo.

• you manually edit foo.qt.H and foo.qt.C with the slot and other implementations for your foo widget; it is understood that in any .qt.H file there will be a class definition that contains Q_OBJECT, etc as this file will be pre-processed by moc. There should be no such thing in .qt.C files, though, as those are not pre-processed through moc.

• then the Makefile has rules by which we pass foo.qt.H through moc on the fly, and compile the result along with your foo.qt.C to obtain foo.qt.o (in objdir). We do the moc processing on the fly because moc is pretty brittle and pushing moc'ed files into the svn repo fails if you try to then compile them with even the most slightly different version of moc.

• finally, you manually edit test-foo.C or app-foo.C and in there you include "Qt4/foo.qt.H"; yes you are including the file that has not been yet processed by moc but that's ok. Add test-foo.C to the svn repo and to depoptions.in.

• the rest is magic thanks to the rules in Makefile.in.

Have a look at src/Qt4/test-BeoChipQt.C for an example, with the associated files BeoChipMainForm.qt.C, BeoChipMainForm.qt.H, BeoChipMainForm.ui, and BeoChipMainForm.ui.H, for an example.

5. EXECUTABLES

• ezvision: This is the main executable. Try to run it with a "--help" command-line option to see the various supported options.

  Typically, you will run:

          ezvision -T --io=raster:image.ppm
  

  to process an image 'image.ppm'. This will take image.ppm as the input image, and will generate output images using the filename stem 'image.ppm'. To also see the output images in onscreen windows (assuming you have a connection to an X server), you can add --out=display

          ezvision -T --io=raster:image.ppm --out=display
  

  To send the output to the display only, without writing any files, using a --in instead of --io (note that --io=foo is an alias for --in=foo --out=foo):

          ezvision -T --in=raster:image.ppm --out=display
  

  A target map is a binary map which is black everywhere except that objects that you wish to detect in the image.ppm appear in the target map as white blobs. So, typically you will use a target map if you want the program to report when it has found a given target, and to automatically stop when it has found all the targets. In this case, save your target map as a target.pgm portable greymap file, and run:

          ezvision -T --io=raster:image.ppm targets.pgm
  

  If you want to look at some internals of the model, you can use the various "show ..." options; for example:

          ezvision -T --save-conspic-maps --io=raster:image.ppm
  

  will show the attentional trajectory (T option), and various conspicuity maps.

          ezvision -Kx \
              --input-frames=0-100@30Hz \
              --output-frames=0-100@30Hz \
              --rescale-output=640x480 \
              --ehc-type=Simple \
              --esc-type=Monkey2 \
              --vc-chans=IC:5.2OFM \
              --nodisplay-additive \
              --foveate-input \
              --io=raster:frame#.ppm
  

  will process a series of input images named frame000000.ppm through frame000100.ppm, loading a new frame every 33.333ms (30Hz) of simulated time (--input-frames option), displaying in an X-window (-x option) a combination of original, attention trajectory, and various internal maps (-K option) in a non-additive manner (drawings are erased at every new frame; --nodisplay-additive), rescaling the output image to 640x480 (--rescale-output option), using a SaccadeController of type "Monkey2" to generate eye/head movements in addition to the covert attention shifts (--esc-type option), using a foveation filter to foveate each input frame according to current eye position (--foveate-input option), using a VisualCortex that has intensity (I), color with weight 5.2 (C:5.2), orientation (O), flicker (F), motion (M) channels (--vc-chans option; note that your channels could also be all off-loaded from your machine and running instead on distant CPUs part of a Beowulf cluster if you added a "B" letter to the --vc-chans option; use this only if you know what you are doing, and see SingleChannelBeo.H and friends).

  Note that if you want your output to go to movie files instead of raster file series, you can use "--in=raster:frame#.ppm --out=mpeg" instead of "--io=raster:frame#.ppm". You can also take the input from an movie file like this "--in=somefile.mpg --out=mpeg".

  Note a few special options that exist in all "proper" executables:

      -h, --[no]help [on]
        Show help message and option syntax [ShowHelpMessage]
  
      -d, --[no]debug
        Use debug mode, which, in particular, will increase the
        verbosity of the log messages and printout all model parameter
        values just before the model starts. [DebugMode]
  
      --[no]use-fpe [on]
        Use floating-point exceptions, which will abort execution if
        overflow, underflow, invalid or division by zero are
        encountered. [UsingFPE]
  
      -Z, --[no]test-mode
        Use test mode, which, in particular, will turn off randomness
        (like --nouse-random), reset random numbers to a reproducible
        pseudo sequence, and turn off most displays. This is mostly
        useful for execution of the test suite, or any situation where
        you need deterministic, reproducible behavior.  [TestMode]
  
      --load-config-from=<file.pmap> []
        Load configuration from file [LoadConfigFile]
  
      --save-config-to=<file.pmap> []
        Save configuration to file [SaveConfigFile]
  

  In particular, the last one will allow you so save a snapshot of all current settings, for later re-loading. So if you have a very long list of command-line options, you may as well use "--save-config-to=settings.pmap", so that next time instead of re-typing that long list you will only have to type "--load-config-from=settings.pmap".

  Note that some new options may pop-up on the fly as you instantiate run-time plugin components; for example, compare:

          ezvision --help
  

  to

          ezvision --ehc-type=Simple --esc-type=Monkey2 --help
  

  and you will see a bunch of new options that will allow you to tune the Monkey2 SaccadeController.

  For the other options, the best is to ask us or look at the source code.

• test-grab: tests your framegrabber by just grabbing a frame and displaying it in a window;

• pvisionTCP, pvisionTCP-master: parallel saliency computation, using our direct TCP transfer library, and spreading processing of each frame across several CPUs (such that one CPU processes color, another intensity, etc). No flicker/motion processing (each new frame is processed independently from the previous ones). Because this is a truly parallel program, both throughput is increased and latency is decreased; runs at 30fps on our 16-CPU cluster. Typically you would run pvisionTCP on each of your slave Beowulf nodes, and pvisionTCP-master on your head node. There are scripts in bin/ to get this started;

  To start it, run "pvisionTCPgo" which will start the slave processes on the Beowulf compute nodes, then run "pvisionTCPmaster" on your framegrabber-equipped head node;

• pvisionTCP2, pvisionTCP2-master: same as above except that flicker is detected as well and the program runs at 15fps;

• CINNICtest: test executable for the contour integration model;

• beograb, beograb-master: parallel frame grabbing; will grab at 30fps and store grabbed frames in round robin onto the local disk of each slave node. This way it is actually possible to grab & save at 30fps, while typically this is too much data for a single CPU to be able to save on its disk in real time (but here each CPU saves only one in 16 frames onto its disk);

• test-hmax, test-psycho: early versions of new test programs for object recognition and the generation of psychophysics displays.

6. PROCESSING VIDEO CLIPS

Video clips can be processed using ezvision just like series of image frames. Just pass --in=path/to/mymovie.mpg to use a movie for input; likewise you can save your output to movies by using --out=mpeg:path/to/outdir/.

6.1. Grabbing video

The easiest way to grab video is to use some Windoze machine equipped with a framegrabber. Typically, we try to grab at 30 frames/s in 640x480 resolution, RGB555 uncompressed mode. You may use other modes as well, like YV12, as supported by your framegrabber. As you grab, make sure that you don't have any dropped frames and that you grab uncompressed data. Indeed, compression (e.g., MPEG, DivX, etc.) will introduce artifacts, and that will have to be taken into account later when you attempt to process your data and interpret the results; that is, are the results you see due to the genuine contents of the video clip, or to the artifacts created by the compression process? That can be very important if your goal is, for example, to use our model to determine priority regions in a video clip and use those regions in a region-based video compression algorithm. If the data you use had already been compressed before, that will taint your results on how well your new compression algorithm is doing.

So, RGB555 640x480 30fps uncompressed AVI is usually the most desirable setting. If you have options to do deinterlacing, you may or may not want to use them (just make a note of what you did and be consistent over your collection of clips).

6.2. Converting video to .tbz files

The easiest way of doing batch processing on video data is to first convert (in a lossless manner) your movie file into a series of individual PPM frames, and then to create a tar archive with all the frames in it, and to compress this archive using the bzip2 program. Once you have a .tbz file in this format, we have a number of scripts that will be able to run the attention model on those files. You must create your .tbz exactly as described below for these scripts to work.

To convert from a movie to .tbz, use the movie2tbz.pl script in saliency/bin/. The script accepts any input video format that 'mplayer' can deal with:

        movie2tbz.pl movie1.avi movie2.mpg movie3.mov

will convert all three movies to .tbz format, yielding movie1.tbz, movie2.tbz and movie3.tbz. There are additional options that movie2tbz.pl accepts; have a look at the script itself to see a description of the usage, in the comment block at the top of the script.

If you want to create your .tbz files manually, you can certainly do that too. The .tbz files should contain a series of frames with the file names:

        frame000000.ppm
        frame000001.ppm
        ...

be sure to have a six-digit number, to start at frame zero, and to have no gap in the number sequence. Follow this naming convention, as it is required by the scripts that process .tbz files. Then tar and compress all the frames, such that your tar file contains no directory/subdirectory information (i.e., when it is untarred, the extracted frames should go into the current directory). For example:

        tar cvf - frame*.ppm | bzip2 -9 > mymovie.tbz

or, if you have so many frames that your shell complains that "frame*.ppm" has too many files, you can also use:

        tar cvf - . | bzip2 -9 > mymovie.tbz

in which case your archive will contain files ./frame000000.ppm, ./frame000001.ppm, etc and the leading ./ is okay (note that .tbz files created with this manner will have an additional entry for just "./", so be sure that you know that if you are trying to count the number of frames in a movie by listing the files the .tbz archive contains).

6.3. Processing a .tbz file

To process a .tbz file through ezvision, use the script process_movie.pl in saliency/bin/; typically:

        process_movie.pl /path/to/movie.tbz

will unpack the .tbz, process the frames through ezvision, and compress the results into a .mpg file. There are many options that process_movie.pl accepts; have a look at the script itself to see a description of the usage, in the comment block at the top of the script. In particular, you can decide on the output format (mpeg, quicktime, divx, tbz, etc) and pass additional options to ezvision too. There are also specialized versions of process_movie.pl that are just shorthands which call process_movie.pl with a bunch of preset options; for example, process_movie_foveated.sh, process_movie_headanim.sh, etc

For process_movie.pl to work, you need to have ezvision and several other programs installed and in your path (mpeg_encode, mencoder, etc). Have a look at the script for details.

7. RUNNING PARALLEL CODE

Before you run parallel code (such as pvisionTCP), make sure that you master the Beowulf administration tools, such as 'brsh,' so that you cleanup after yourself when you are done with the beowulf. For example, if you have started a bunch of pvisionTCP processes, be sure to execute:

        brsh killall -9 pvisionTCP

when you are done. For brsh to work, you need to have a .rhosts file with:

        iLab1.usc.edu itti
        iLab2.usc.edu itti
        iLab3.usc.edu itti
        iLab4.usc.edu itti
        iLab5.usc.edu itti
        iLab6.usc.edu itti
        iLab7.usc.edu itti
        bsl10.usc.edu itti
        bsl11.usc.edu itti
        n01.beo.usc.edu itti
        n02.beo.usc.edu itti
        n03.beo.usc.edu itti
        n04.beo.usc.edu itti
        n05.beo.usc.edu itti
        n06.beo.usc.edu itti
        n07.beo.usc.edu itti
        n08.beo.usc.edu itti
        n09.beo.usc.edu itti
        n10.beo.usc.edu itti
        n11.beo.usc.edu itti
        n12.beo.usc.edu itti
        n13.beo.usc.edu itti
        n14.beo.usc.edu itti
        n15.beo.usc.edu itti
        n16.beo.usc.edu itti

in your home directory, except that you replace "itti" by your login name and make sure that your own computer's name also is in the list. Then, brsh will execute the command passed as argument on every node in the beowulf; for example:

        brsh ps aux       #  shows you all processes
        brsh df -h        #  shows you all disk space
        ...

Also check out the real time CPU and network load graphs at http://iLab.usc.edu/beo/

8. DOCUMENTATION

Documentation is automatically extracted from the source code and published on the web at:

http://iLab.usc.edu/sdoc/html/

It is also available in PDF or RTF format.

Please document your code using the doxygen syntax (see http://www.doxygen.org/). Doxygen will extract special comments from your code and organize them along with the class names and methods into some nice web pages. Regular comments will not be used by doxygen, so feel free to use them a lot inside your code. So the idea is that all regular comments are only for people editing the code, and a few special comments are provided for people just wanting to use your classes but not look at the code in detail. So the special comments explain what the class does and what each method does. Typically this means:

• towards the top of your class definition in your .H, have a block like:

      //! Short summary in one line
      /*! Longer description of what the class does, that
          can take several lines
       */
  

  If you have only a short summary, only write the first one-line comment (using //!); if you have a long description (using /*! ... * /), then make sure you still include the short summary too in that case. Any deviation from this scheme will produce bogus documentation;

• before each method in your .H, either a single-line comment or if you have more to say, both a single-line comment and a multiline comment as above;

• do not repeat these comments in your .C; what the method does and what parameters it takes is documented in the .H; however, put extensive regular comments inside your functions (without using the doxygen markers) to explain people editing the code what you are doing;

• the first line of both your .H and you .C should be a single-line, regular (non-doxygen) comment that states the file name and a very short description of what the class does (useful for printing, so that we know which file corresponds to a given printout; also useful for the roadmap below);

• see V4Lgrabber.H and V4Lgrabber.C for a good example to use when writing a new class.

9. WRITING CODE

Please follow these guidelines when writing new code:

• no 'printf,' 'cout,' or 'cerr' allowed. Instead, use the functions provided by log.H to display various messages;

• please keep line length to less than 80 characters, so that the code will print properly and we won't get very annoyed because we have to resize our editor windows;

• try to avoid 'malloc' and 'free,' unless you have to use it (e.g., will do a 'realloc' later). Instead use the C++ functions 'new' and 'delete';

• make sure that each time you allocate memory with 'new' you also free it with 'delete.' So, if possible do not allocate memory for return values of your functions, leaving it to the user of the function to free the memory when they are done with the return value; rather ask the user to pass a memory buffer that has been already allocated as a parameter to your function. Try to use SharedPtr's to handle your dynamically allocated objects (see SharedPtr.H, and try a "grep SharedPtr *.C" for examples of how to use it);

• try to avoid passing pointers as function parameters; rather use the C++ passing of arguments by reference (using an &; for example use 'function(float& retval)' rather than 'function(float *retval)'; this way you will not have to deal with pointers inside your function and your code will be easier to read and cleaner);

• when writing a new class, follow the general architecture that has been used in other classes: make a .H file, a .C file, enclose your definitions in the .H file by #ifndef MY_CLASS_DEFINED, try to include as few files as possible in your .H (just what is needed for class definition) and include the rest in your .C (what is needed for actual implementation of the class), do not repeat comments from your .H in your .C, separate your methods in your .C by // ###.. (70 times #), and so on. See V4Lgrabber.H and V4Lgrabber.C for a good example to use when writing a new class (and see previous section regarding comments). When creating a new class, start from a copy of the templates provided in NewClass.H and NewClass.C;

• make sure that your class has a constructor with no argument; this is useful if people want to have your class as a member inside their class, or to create arrays of objects from your class. Typically, I find it useful to have a boolean variable 'initialized' inside my classes that let me know whether proper initialization was done; see for example Image.H/.C. If you have several possible constructors (e.g., with various numbers of parameters, I find it useful to only write the initialization code once as an 'init' method, and then have the various constructors call this method); similarly a 'freeMem' method is useful if you want to reinitialize your object (and then your destructor just calls freeMem());

• do not declare all your variables at the top of your function like you must do in C; rather declare each variable the first time it is used, as is usual in C++. Similarly, unless you want to use a loop variable after the loop is finished, declare your loop variable inside your loop statement; declaring variables so that they have as short a lifetime (because they run out of scope) as possible will help you avoid lots of bugs!

  // instead of:
  
          void MyClass::myFunction() // WRONG!
          {
            int x, y, z, i;
            ...
            for (i = 0; i < 10; i ++) {
               x = i * 2;
               do_stuff(x);
            }
            ...  // never use 'i' again...
          }
  
  // write:
  
          void MyClass::myFunction()
          {
            ...
            for (int i = 0; i < 10; ++i) {
               const int x = i * 2;
               do_stuff(x);
            }
  
            // 'i' and 'x' run out of scope here so the compiler will
            // complain if you inadvertently use them past this point.
            ...
          }
  

• use capitalized names for classes and uncapitalized names for methods; for example:

  class MyCoolClass;                    // note uppercase M at start
  void MyCoolClass::myCoolMethod();     // note lowercase m at start
  

  Use your class name as your file name (MyCoolClass.H and MyCoolClass.C); using different names for class and file DOES NOT MAKE SENSE (e.g., ssc.H and class SSC are getting on my nerves! it should be Ssc.H and class Ssc)

• in your classes, please put public methods first (under a public: heading), then your private methods and data (under a private: heading). Indeed, users of your class do not care about the private members, so why would you want to bore them from the start by putting your private section first? see V4Lgrabber.H/.C;

• if possible, use emacs as editor; it will properly highlight and indent (using <TAB>) your code automatically for you!

• use only the five following base datatypes if you need a guaranteed data size:

  byte          // for a 8-bit unsigned integer number
  int16         // for a 16-bit signed integer number
  int32         // for a 32-bit signed integer number
  float         // for a 32-bit floating point number
  double        // for a 64-bit floating point number

If you could tolerate that your variable be either a 32 or 64-bit int, then use int.

• use 'const' whenever possible in your function declarations, as this makes the function declaration much easier to understand and it also avoids lots of bugs; so every read-only parameter should be declared const; every read-write parameter should be passed by reference (&) and not declared const; every method which does not modify the data members of the class should be declared const; for example:

        void MyClass::getInfo(const int32 zz, float& result1,
                              byte& result2) const;

is a method with 1 read-only parameter, 2 read-write parameters, and which does not modify the internal data members of MyClass;

• try to have as few hardcoded numbers as possible; each time you need a hardcoded number that someone may want to modify later, use a define statement in your .H to give a macro name to that number, then use the macro name in your code; for example, instead of:

// in myClass.C:
Image<float> im(100, 100);

write:

// in myClass.H:
// image size:
const int IMWIDTH = 100;
const int IMHEIGHT = 100;

// in myClass.C:
Image<float> im(IMWIDTH, IMHEIGHT);

and try to avoid hardcoded numbers in any case! Use ModelParam<T> parameters instead (see ModelParam.H). Of course do not abuse of that rule: if you implement some math functions you will have lots of numbers; so use your judgment to decide when to define a constant; typically you will do it if you use it several times in several different methods, but not if you just use it once in one method (unless you consider that it is a tunable parameter of your code).

• if you want to check the validity of parameters in a function, use the ASSERT() macro, which we can either define as calling assert() (see 'man assert') while in development mode, or as doing nothing so that we save some computation time when the code is stable; for example:

       void Image::getValue(const int32 x, const int32 y)
       {
         ASSERT(x >= 0 && x < w);  // will quit if x coordinate outside image
         ASSERT(y >= 0 && y < h);  // will quit if y coordinate outside image
         ...
       }
  

• please write readable code! Most cryptic C++ constructs will not buy you anything in execution time (on the contrary), which is our main priority. So use lots of parentheses, even if you know that some of them are not needed, to make your code easier to read. The compiler will remove all extra parentheses before compiling. Also use lots of spaces, as they make fast reading of the code much easier. For example:

             NO!                            YES
  ------------------------------------------------------------------------------
  for(int i=0;i<10;i++) ...       for (int i = 0; i < 10; ++i) ...
  
  myfunction(a,b,10,z);           myFunction(a, b, 10, z);
  
  if(x=func()==1) ...             x = func();   // comment
                                  if (x == 1) ...
  
  for(z=0,x=0;x<imgx;x++,buf++)   z = 0;  // comment
                                  for (int x = 0; x < imgx; ++x) {
                                      ...
                                      ++buf;  // comment
                                  }
  
  x=x>y?x:y;                      if (x < y) x = y;    // faster
  
  printf("bug %d\n", x);          LERROR("bug %d", x);
  

  see Image.H and Image.C as a good example of our writing style and class organization rules.

10. ROADMAP

Have a look at the papers and at section 1 for general information and a brief description of what the various classes do. Then check out the online documentation. Then look at the code itself.

Use the online documentation (see above). It is clickable, so that each time you encounter an object type that you don't know, you can just click on it to instantly discover what it is.

A good order in which to get acquainted with the various classes is as follows (look at both the .H and .C) -- NOTE: the list below may be obsolete; the online documentation is the only up-to-date reference (updated nightly):

10.1. Visual attention model

• log.H -- Error message facility and interface to syslog
• saliency.H -- type definitions and macros
• Pixels.H -- basic pixel types
• Point2D.H -- a basic 2D point class
• Rectangle.H -- a basic rectangle class
• Image.H -- an image template class with many image processing functions
• Raster.H -- writes a raster to disk / displays it
• ImageSet.H -- a template image pyramid class

• SaliencyMap.H -- class declarations for saliency map
• WinnerTakeAll.H -- header file for winner-take-all network
• VisualCortex.H -- the early visual processing stages
• Brain.H -- the whole brain
• SaccadeController.H -- optional eye/head movement generation
• ShapeEstimator.H -- estimate the size/shape of attended objects
• SimulationViewer.H -- do various drawings to display results
• StdBrain.H -- a Brain with a bunch of standard modules pre-implemented in it

• ezvision.C -- main executable
• openvision.C -- similar to ezvision but uses filters defined in a text file
• streamvision.C -- similar to ezvision but reads/writes movie streams
• vision.C -- this is now obsolete; use ezvision instead

10.2. Contour integration model

• readConfig.H -- deal with configuration files
• contourNeuron.H -- CINNIC classes
• CINNICtest.H -- test binary for CINNIC neuron

10.3. Grabbing & displaying images

• FrameGrabber.H -- abstraction of a frame grabber
• V4Lgrabber.H -- definition and access functions for video4linux grabber
• IEEE1394grabber.H -- definition and access functions for FireWire grabber
• XWindow.H -- class definition for a simple window
• XWinManaged.H -- an X window with event management
• Timer.H -- a simple class for precise time measurements

10.4. Parallel computing

• TCPmessage.H -- direct message passing over TCP connections
• Beowulf.H -- simple interfacing to a Beowulf cluster
• pvisionTCP.H -- Definitions for pvisionTCP & pvisionTCP-master

10.5. Low-level details of parallel computing (should not be needed)

• TCPdefs.H -- common definitions for the various TCPxxx classes
• SockServ.H -- a simple multi-client socket server
• TCPcliServ.H -- a client/server to receive/send TCPmessage
• TCPcommunicator.H -- a class to handle multiple TCPmessage communications

10.6. Audio

• AudioGrabber.H -- grab audio samples from /dev/dsp
• AudioMixer.H -- control audio mixer and select audio grab source

10.7. Misc hardware drivers

• ssc.H -- driver for a serial R/C servo controller
• carcontrol.H -- control an R/C car like the one of the Beobots
• serial.H -- serial port driver
• GPS.H -- driver for Gramin/NMEA global positioning system unit
• Gyro.H -- interface to a GyroMouse
• lcd.H -- interface to a small alphanumeric serial LCD display
• SpeedSensor -- driver for a mouse-based speed sensor
• VCC4.H -- driver for a VCC4 pan/tilt/zoom camera

10.8. Psychophysics displays

• PsychoDisplay.H -- easily create psychophysics displays using SDL

• psycho-movie.C -- show movies and record eye movements
• psycho-still.C -- show still images and record eye movements
• psycho-search.C -- search for one target
• psycho-dsearch.C -- search for two targets
• psycho-headmove.C -- record head movements
• psycho-only.C -- pure psychophysics display of still images (no eye mvts)