CINNIC2 Class Reference

Main class to run an image in CINNICtest for contours. More...

#include <CINNIC/CINNIC2.H>

Collaboration diagram for CINNIC2:

[legend]

List of all members.

Public Member Functions
	CINNIC2 ()
	default constructor
void	CINtoggleFrameSeries (bool toggle)
	turn on using movie frames
void	CINconfigLoad (readConfig &config)
	load configuration file params
void	CINrunSimpleImage (const ContourNeuronCreate< FLOAT > &NeuronTemplate, const char fileName[100], unsigned int frame, Image< byte > &input, readConfig &config)
	run an image in CINNIC2 with a neuron template
void	CINgetOrientFiltered (Image< byte > &input)
	get the orientation filtered pre version of the input image
void	CINgetOrientFilteredMap (Image< byte > &input)
	get the orientation filtered version, but use convolution maps
void	CINgetScaled ()
	get the scaled representations of the image
void	CINinitCINNIC (const std::vector< std::vector< Image< FLOAT > > > &input, readConfig &config, const INT sizeX, const INT sizeY)
	initalize parameters to run CINNIC2
void	CINcomputeGroups (const std::vector< std::vector< Image< FLOAT > > > &input)
	initalize groups to run CINNIC2
void	CINrunImage (const ContourNeuronCreate< FLOAT > &NeuronTemplate, const std::vector< std::vector< Image< FLOAT > > > &input, readConfig &config, const std::vector< FLOAT > &GTV)
	call contourRun2 for each iteration and scale
void	CINrunImageFrames (const ContourNeuronCreate< FLOAT > &NeuronTemplate, const std::vector< std::vector< Image< FLOAT > > > &input, readConfig &config, const std::vector< FLOAT > &GTV)
	call contourRun2 for each iteration and scale
Static Public Attributes
static const unsigned short	CINkernelSize = kernelSize
static const unsigned short	CINscales = scales
static const unsigned short	CINorientations = orientations
static const unsigned short	CINiterations = iterations
static const FLOAT	CINsmallNumber = 0.001F

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Detailed Description

Main class to run an image in CINNICtest for contours.

This is the central class at this point for running CINNIC. It works by creating a CINNIC template for neuron connections in contourNeuron. It then imports an image as defines from the command line. The image is processed for orientations using the orientedFilter in Image as well as a few other processes. The image is then reduced and a 3D map of the image created and stored in ImageMap. This map and the neuron are then fed into contourRun which runs the 3D image against the template neuron. Output is produced in many ways including several raw data dumps and image dumps.

Definition at line 85 of file CINNIC2.H.

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Constructor & Destructor Documentation

CINNIC2::CINNIC2

(

)

default constructor

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Member Function Documentation

void CINNIC2::CINcomputeGroups

(

const std::vector< std::vector< Image< FLOAT > > > &

input

)

initalize groups to run CINNIC2

void CINNIC2::CINconfigLoad

(

readConfig &

config

)

load configuration file params

void CINNIC2::CINgetOrientFiltered

(

Image< byte > &

input

)

get the orientation filtered pre version of the input image

void CINNIC2::CINgetOrientFilteredMap

(

Image< byte > &

input

)

get the orientation filtered version, but use convolution maps

void CINNIC2::CINgetScaled

(

)

get the scaled representations of the image

void CINNIC2::CINinitCINNIC	(	const std::vector< std::vector< Image< FLOAT > > > &	input,
		readConfig &	config,
		const INT	sizeX,
		const INT	sizeY
	)

initalize parameters to run CINNIC2

void CINNIC2::CINrunImage	(	const ContourNeuronCreate< FLOAT > &	NeuronTemplate,
		const std::vector< std::vector< Image< FLOAT > > > &	input,
		readConfig &	config,
		const std::vector< FLOAT > &	GTV
	)

call contourRun2 for each iteration and scale

void CINNIC2::CINrunImageFrames	(	const ContourNeuronCreate< FLOAT > &	NeuronTemplate,
		const std::vector< std::vector< Image< FLOAT > > > &	input,
		readConfig &	config,
		const std::vector< FLOAT > &	GTV
	)

call contourRun2 for each iteration and scale

void CINNIC2::CINrunSimpleImage	(	const ContourNeuronCreate< FLOAT > &	NeuronTemplate,
		const char	fileName[100],
		unsigned int	frame,
		Image< byte > &	input,
		readConfig &	config
	)

run an image in CINNIC2 with a neuron template

Referenced by main().

void CINNIC2::CINtoggleFrameSeries

(

bool

toggle

)

turn on using movie frames

Referenced by main().

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The documentation for this class was generated from the following file:

• src/CINNIC/CINNIC2.H